人物簡介
徐雲,男,1960年生,博士,教授。2002年中國科學技術大學計算機系博士畢業,獲計算機軟體與理論專業博士學位。現為IEEE、ACM和中國計算機學會會員、中國計算機學會理論計算機科學專委會委員。
業務貢獻
2002年起在中國科學技術大學計算機學院、國家高性能計算中心(合肥)從事並行計算與套用相關的研究和教學工作。近幾年主要研究多核並行編程模型及性能最佳化、高性能生物序列分析算法等。至今已主持國家重點自然科學基金子課題及面上課題、973子課題、863子課題1項各1項,以及華為合作項目等橫向項目,作為骨幹參加了863、973、發改委和工信部等課題十餘項。在國內外重要學術期刊TCBB、TPDS、Bioinformatics、BMCBioinformatics、PLOSOne、InformationSciences、計算機學報和軟體學報等及國際學術會議上發表學術論文50餘篇。
主講課程
研究生課程:並行算法、算法設計與分析
本科生課程:並行計算
研究方向
高性能計算大規模生物序列分析與數據挖掘
性能最佳化與分散式算法
獲獎情況
[01]“並行計算”課程的創建及其輻射與示範作用,國家級教學成果二等獎,排名第2,2009.9
[02]“並行計算”相關課程教學團隊,國家級教學團隊,排名第3,2009.9
[03]中國科大王寬誠育才獎一等獎,個人,2009.8
主持或參與工作及項目
受邀參與《算法導論》第三版翻譯工作2011.1-2011.11並行計算模型和性能最佳化,國家863重大項目子課題,2010.1-2010.12
單體型問題及其算法研究,國家自然基金面上項目,2010-2012
基於龍芯3號的通信與數學庫的研製,“核心電子器件、高端通用晶片及基礎軟體產品”科技重大專項,2009-2012
多核並行編程模型,華為基金項目,2011.1-2011.12
BWDSP100C編譯器實現,核心電子器件、高端通用晶片及基礎軟體產品”科技重大專項,2009-2010
多核龍芯處理器系統軟體移植與開發,國家863重點項目子課題,2008-2010
發表論文
在Bioinformatics、PLoSONE、BMCBioinformatics、計算機學報和軟體學報等刊物和國際學術會議上發表學術論文50餘篇期刊論文
JiaoyunYang,YunXu,YiShang."Anewprogressivealgorithmformultiplelongestcommonsubsequencesproblemanditsefficientparallelization".IEEETrans.onParallelandDistributedSystems,2012.DOI:10.1109/TPDS.2012.202.PreprintYunXu,DaTeng,YimingLei."MinePhos:aliteratureminingsystemforproteinphoshphorylationinformationextraction".IEEETrans.onComput.Biology&Bioinformatics,2012,9(1):311-315
YanLi,JianpingWang,ChunmingQiao,AshwinGumaste,YunXu,YinlongXu."IntegratedFiber-Wireless(FiWi)AccessNetworksSupportingInter-ONUCommunications".IEEE/OSAJournalofLightwaveTechnology,2010,28(5):714-724
YunXu,ZhiHaoWang,YiMingLei,YuZhongZhaoandYuXue."MBA:ALiteratureMiningSystemforExtractingBiomedicalAbbreviations".BMCBioinformatics,2009,10:14
Zhi-HuiHu,YunXu,Liu-ShengHuangandHowardLeung."AChineseHandwritingEducationSystemwithAutomaticErrorDetection".TheJournalofSoftware(JSW),2009,4(2):101-106
GuoliangChen,GuangzhongSun,YunXuandBaiLong."Integratedresearchofparallelcomputing:StatusandFuture",ChineseSciBull,2009,54:1845-1853
YuzhongZhao,YunXu,ZhihaoWang,HongZhangandGuoliangChen."ABetterBlockPartitionandLigationStrategyforIndividualHaplotyping".Bioinformatics,2008,24(23):2720-2725
YunXu,BingfengYan,GuoliangChen."CoreManagementandAlgorithmsinall-to-allMulticast".ChineseJournalofComputerResearchandDevelopment,2008,45(6):923-929(InChinese)
KunpengZhang,YunXu,GuoliangChen."PECB:PredictionofEnzymeCatalyticResiduesBasedonNaïveBayesClassification".Int.J.ofBioinformaticsResearchandApplication,2008,4(3):295-305
YuzhongZhao,YunXu,QiangfengZhang,GuoliangChen."AnOverviewoftheHaplotypeProblemsandAlgorithms".FrontiersofComputerScienceinChina,2007,Vol.1,No3:272-282
Zhang,Qiangfeng,Xu,Yun,Chen,Guoliang,Che,Haoyang."HaplotypingandHaplotypeFrequencyEstimatesonTrioGenotypeData".ChineseJournalofSoftware,2007,Vol.18,No.9:2090-2099
QiangfengZhang,YuzhongZhao,GuoliangChen,YunXu."Estimatehaplotypefrequenciesinpedigrees".BMCBioinformatics,2006,7(S4):S5
YunXu,GuoliangChen,QiangfengZhang,JunGu."EfficiencyAnalysisofAsynchronicParallelizationofRandomizedAlgorithms".ChineseJournalofSoftware,2003,Vol.14,No.5:871-876.(InChinese)
YunXu,GuoliangChen,GuoyiZhang."AModifiedDPAlgorithmforSolvingHardSATProblems".JournalofUniversityofScienceandTechnologyofChina,2002,Vol.32,No.3:358-362.(InChinese)
YunXu,GuoliangChen,YinlongXu,JunGu."O(m^2)TimeRandomizedAlgorithmsforSATProblem".ChineseJournalofComputers,2001,Vol.24,No.11:1136-1141.(InChinese)
會議論文
HaitaoJiang,YunXu,YinLiao,GuojieJin,GuoliangChen.UKCFANewGraphicsDriverCross-platformTranslationFrameworkforVirtualMachines.NPC2012,Accepted.YunXu,YanLi.“ONUPatchingforEfficientVoDServiceoverIntegratedFiber-Wireless(FiWi)AccessNetworks”.The6thInternationalICSTConferenceonCommunicationsandNetworkinginChina(CHINACOM2011),August17-19,2011,Harbin,China.(InvitedPaper)
BoChen,YunXu,JiaoyunYang,HaitaoJiang."ANewParallelMethodofSmith-WatermanAlgorithmonaHeterogeneousPlatform".The10thInternationalConferenceonAlgorithmsandArchitecturesforParallelProcessing(ICA3PP2010),Busan,KoreaonMay21~23,2010,Page(s):79-90
JiaoyunYang,YunXu,YiShang."AnEfficientParallelAlgorithmforLongestCommonSubsequenceProblemonGPUs".ProceedingsoftheWorldCongressonEngineering(WCE2010),2010,June30-July2,2010,London,U.K.,Page(s):499-504
YunXu,MingzhiShao,DaTeng."OptimizationofTriangularMatrixFunctionsinBLASLibraryonLooson2F".IFIPInternationalConferenceonNetworkandParallelComputing(NPC2010),Zhengzhou,China,13-15,Sept.2010.Page(s):35-45
Yu,Linbin,Xu,Yun."AparallelgibbssamplingalgorithmformotiffindingonGPU".IEEEInternationalSymposiumonParallelandDistributedProcessingwithApplications(ISPA2009),Chengdu,Sichuan,China,2009,pp555-558
Zhang,Hong;Xu,Yun;Zhao,Yuzhong."Discoveryofmotifpairsfromprotein-proteininteractionnetworks".Proceedings.InternationalJointConferenceonBioinformatics,SystemsBiologyandIntelligentComputing(IJCBS2009),Shanghai,China,August,2009,pp293-296
Z.H.Hu,H.LeungandYunXu.StrokeCorrespondenceBasedonGraphMatchingforDetectingStrokeProductionErrorsinChineseCharacterHandwriting.8thPacific-RimConferenceonMultimedia(PCM),2007,p734-743